In this study, an apatite reference material (RM), Eppawala-AP, was obtained and calibrated from a mega-crystal of Eppawala carbonatite (collected in northwestern region of Sri Lanka) to standardize chlorine isotope analysis. A homogeneity test and chlorine isotope composition measurement of the RM were performed using secondary ion mass spectrometry (SIMS) and continuous gas flow isotope ratio mass spectrometry (CF-IRMS), respectively. The RM, with a recommended δ37Cl value of -0.74 ± 0.15‰, can be utilized as a matrix-matched standard (~1.55 wt. % Cl) to correct the instrumental mass fractionation (IMF) during in situ analysis, or as a quality control material for both in situ and bulk analysis, to facilitate high quality measurement and inter-laboratory data comparison. This RM is available to the scientific community by contacting the corresponding author. Our homogeneity test indicates an absence of orientation effect during SIMS analysis for the specific apatite grain investigated here, and suggests a repeatability of 0.13‰ for SIMS apatite chlorine isotope analysis. The matrix effect of minerals with complex chemistry predicts that the chlorine content is a controlling factor of IMF during in situ apatite chlorine isotope analysis; hence, additional RMs with variable concentrations of chlorine are required for routine δ37Cl measurement.